AFQ.tasks.tractography
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Module Contents#
Functions#
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full path to a nifti file containing the |
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full path to a nifti file containing the |
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full path to a nifti file containing the |
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full path to the complete, unsegmented tractography file |
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full path to the complete, unsegmented tractography file |
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Attributes#
- AFQ.tasks.tractography.export_seed_mask(tracking_params)[source]#
full path to a nifti file containing the tractography seed mask
- AFQ.tasks.tractography.export_stop_mask(tracking_params)[source]#
full path to a nifti file containing the tractography stop mask
- AFQ.tasks.tractography.export_stop_mask_pft(pve_wm, pve_gm, pve_csf)[source]#
full path to a nifti file containing the tractography stop mask
- AFQ.tasks.tractography.streamlines(data_imap, seed, stop, tracking_params)[source]#
full path to the complete, unsegmented tractography file
- Parameters
- tracking_paramsdict, optional
The parameters for tracking. Default: use the default behavior of the aft.track function. Seed mask and seed threshold, if not specified, are replaced with scalar masks from scalar[0] thresholded to 0.2. The
seed_mask
andstop_mask
items of this dict may beAFQ.definitions.image.ImageFile
instances. Iftracker
is set to “pft” thenstop_mask
should be an instance ofAFQ.definitions.image.PFTImage
.