:py:mod:`AFQ.utils.bin`
=======================

.. py:module:: AFQ.utils.bin


Module Contents
---------------


Functions
~~~~~~~~~

.. autoapisummary::

   AFQ.utils.bin.model_input_parser
   AFQ.utils.bin.model_predict_input_parser
   AFQ.utils.bin.toml_to_val
   AFQ.utils.bin.val_to_toml
   AFQ.utils.bin.dict_to_toml
   AFQ.utils.bin.dict_to_json
   AFQ.utils.bin.func_dict_to_arg_dict
   AFQ.utils.bin.parse_config_run_afq
   AFQ.utils.bin.generate_config
   AFQ.utils.bin.generate_json



Attributes
~~~~~~~~~~

.. autoapisummary::

   AFQ.utils.bin.qsi_prep_ignore_params


.. py:function:: model_input_parser(usage)


.. py:function:: model_predict_input_parser(usage)


.. py:function:: toml_to_val(t)


.. py:function:: val_to_toml(v)


.. py:function:: dict_to_toml(dictionary)


.. py:data:: qsi_prep_ignore_params
   :value: ['bids_path', 'bids_filters', 'preproc_pipeline', 'participant_labels', 'output_dir']

   

.. py:function:: dict_to_json(dictionary)


.. py:function:: func_dict_to_arg_dict(func_dict=None, logger=None)


.. py:function:: parse_config_run_afq(toml_file, default_arg_dict, to_call='export_all', overwrite=False, logger=None, verbose=False, dry_run=False, special_args={'SEGMENTATION_PARAMS': 'segmentation_params', 'TRACTOGRAPHY_PARAMS': 'tracking_params'})


.. py:function:: generate_config(toml_file, default_arg_dict, overwrite=False, logger=None)


.. py:function:: generate_json(json_folder, overwrite=False, logger=None)