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  • Installing pyAFQ
  • Using pyAFQ
  • Examples
  • Getting help using pyAFQ
  • Contributing to pyAFQ
  • API Reference
  • Developing pyAFQ
  • RecoBundles80 using AFQ API
  • AFQ API
  • Callosal bundles using AFQ API
  • Plotting the Optic Radiations
  • How pyAFQ uses BIDS
  • Using cloudknot to run pyAFQ on AWS batch:
  • AFQ with HCP data
  • Plotting tract profiles
  • Plotting tract profiles using RecoBundles
  • Plotting Novel Tract Profiles:
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Examples#

Introductory examples.

RecoBundles80 using AFQ API

RecoBundles80 using AFQ API#

AFQ API

AFQ API#

Callosal bundles using AFQ API

Callosal bundles using AFQ API#

Plotting the Optic Radiations

Plotting the Optic Radiations#

How pyAFQ uses BIDS

How pyAFQ uses BIDS#

Using cloudknot to run pyAFQ on AWS batch:

Using cloudknot to run pyAFQ on AWS batch:#

AFQ with HCP data

AFQ with HCP data#

Plotting tract profiles

Plotting tract profiles#

Plotting tract profiles using RecoBundles

Plotting tract profiles using RecoBundles#

Plotting Novel Tract Profiles:

Plotting Novel Tract Profiles:#

Download all examples in Python source code: auto_examples_python.zip

Download all examples in Jupyter notebooks: auto_examples_jupyter.zip

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