- class AFQ.api.participant.ParticipantAFQ(dwi_data_file, bval_file, bvec_file, output_dir, bids_info=None, **kwargs)[source]#
Export a specific output. To print a list of available outputs, call export without arguments.
Name of the output to export. Default: “help”
The specific output, or None if called without arguments.
- cmd_outputs(cmd='rm', dependent_on=None, exceptions=, suffix='')[source]#
Perform some command some or all outputs of pyafq. This is useful if you change a parameter and need to recalculate derivatives that depend on it. Some examples: cp, mv, rm . -r will be automtically added when necessary.
Command to run on outputs. Default: ‘rm’
- dependent_onstr or None
Which derivatives to perform command on . If None, perform on all. If “track”, perform on all derivatives that depend on the tractography. If “recog”, perform on all derivatives that depend on the bundle recognition. Default: None
- exceptionslist of str
Name outputs that the command should not be applied to. Default: 
Parts of command that are used after the filename. Default: “”