AFQ.tasks.segmentation

Module Contents

Functions

segment(subses_dict, bundle_dict, data_imap, reg_template, mapping_imap, tractography_imap, tracking_params, segmentation_params)

clean_bundles(subses_dict, bundles_file, bundle_dict, clean_params, tracking_params, segmentation_params)

export_bundles(subses_dict, clean_bundles_file, bundles_file, bundle_dict, tracking_params, segmentation_params)

export_sl_counts(subses_dict, bundle_dict, clean_bundles_file, bundles_file, tracking_params, segmentation_params)

tract_profiles(subses_dict, clean_bundles_file, bundle_dict, scalar_dict, profile_weights, dwi_affine, tracking_params, segmentation_params)

get_scalar_dict(scalars, data_imap, mapping_imap)

get_segmentation_plan()

Attributes

logger

outputs

AFQ.tasks.segmentation.logger[source]
AFQ.tasks.segmentation.outputs[source]
AFQ.tasks.segmentation.segment(subses_dict, bundle_dict, data_imap, reg_template, mapping_imap, tractography_imap, tracking_params, segmentation_params)[source]
AFQ.tasks.segmentation.clean_bundles(subses_dict, bundles_file, bundle_dict, clean_params, tracking_params, segmentation_params)[source]
AFQ.tasks.segmentation.export_bundles(subses_dict, clean_bundles_file, bundles_file, bundle_dict, tracking_params, segmentation_params)[source]
AFQ.tasks.segmentation.export_sl_counts(subses_dict, bundle_dict, clean_bundles_file, bundles_file, tracking_params, segmentation_params)[source]
AFQ.tasks.segmentation.tract_profiles(subses_dict, clean_bundles_file, bundle_dict, scalar_dict, profile_weights, dwi_affine, tracking_params, segmentation_params)[source]
AFQ.tasks.segmentation.get_scalar_dict(scalars, data_imap, mapping_imap)[source]
AFQ.tasks.segmentation.get_segmentation_plan()[source]