AFQ.tasks.viz

Module Contents

Functions

_viz_prepare_vol(vol, xform, mapping, scalar_dict)

viz_bundles(subses_dict, dwi_affine, viz_backend, bundle_dict, data_imap, mapping_imap, segmentation_imap, tracking_params, segmentation_params, best_scalar, xform_volume=False, sbv_lims=[None, None], xform_shade_by_volume=False, volume_opacity=0.3, n_points=40)

viz_indivBundle(subses_dict, dwi_affine, viz_backend, bundle_dict, data_imap, mapping_imap, segmentation_imap, tracking_params, segmentation_params, reg_template, best_scalar, xform_volume_indiv=False, sbv_lims_indiv=[None, None], xform_shade_by_volume_indiv=False, volume_opacity_indiv=0.3, n_points_indiv=40)

plot_tract_profiles(subses_dict, scalars, tracking_params, segmentation_params, segmentation_imap)

get_viz_plan()

Attributes

logger

outputs

AFQ.tasks.viz.logger[source]
AFQ.tasks.viz.outputs[source]
AFQ.tasks.viz._viz_prepare_vol(vol, xform, mapping, scalar_dict)[source]
AFQ.tasks.viz.viz_bundles(subses_dict, dwi_affine, viz_backend, bundle_dict, data_imap, mapping_imap, segmentation_imap, tracking_params, segmentation_params, best_scalar, xform_volume=False, sbv_lims=[None, None], xform_shade_by_volume=False, volume_opacity=0.3, n_points=40)[source]
AFQ.tasks.viz.viz_indivBundle(subses_dict, dwi_affine, viz_backend, bundle_dict, data_imap, mapping_imap, segmentation_imap, tracking_params, segmentation_params, reg_template, best_scalar, xform_volume_indiv=False, sbv_lims_indiv=[None, None], xform_shade_by_volume_indiv=False, volume_opacity_indiv=0.3, n_points_indiv=40)[source]
AFQ.tasks.viz.plot_tract_profiles(subses_dict, scalars, tracking_params, segmentation_params, segmentation_imap)[source]
AFQ.tasks.viz.get_viz_plan()[source]