AFQ.utils.bin

Module Contents

Functions

parse_string(option, opt, value, parser)

model_input_parser(usage)

model_predict_input_parser(usage)

get_default_args(func)

toml_to_val(t)

val_to_toml(v)

dict_to_toml(dictionary)

dict_to_json(dictionary)

func_dict_to_arg_dict(func_dict=None, logger=None)

parse_config_run_afq(toml_file, default_arg_dict, to_call='export_all', overwrite=False, logger=None, verbose=False, special_args={'CLEANING': 'clean_params', 'SEGMENTATION': 'segmentation_params', 'TRACTOGRAPHY': 'tracking_params'})

generate_config(toml_file, default_arg_dict, overwrite=False, logger=None)

generate_json(json_file, default_arg_dict, overwrite=False, logger=None)

Attributes

qsi_prep_ignore_params

AFQ.utils.bin.parse_string(option, opt, value, parser)[source]
AFQ.utils.bin.model_input_parser(usage)[source]
AFQ.utils.bin.model_predict_input_parser(usage)[source]
AFQ.utils.bin.get_default_args(func)[source]
AFQ.utils.bin.toml_to_val(t)[source]
AFQ.utils.bin.val_to_toml(v)[source]
AFQ.utils.bin.dict_to_toml(dictionary)[source]
AFQ.utils.bin.qsi_prep_ignore_params = ['bids_path', 'bids_filters', 'preproc_pipeline', 'custom_tractography_bids_filters',...[source]
AFQ.utils.bin.dict_to_json(dictionary)[source]
AFQ.utils.bin.func_dict_to_arg_dict(func_dict=None, logger=None)[source]
AFQ.utils.bin.parse_config_run_afq(toml_file, default_arg_dict, to_call='export_all', overwrite=False, logger=None, verbose=False, special_args={'CLEANING': 'clean_params', 'SEGMENTATION': 'segmentation_params', 'TRACTOGRAPHY': 'tracking_params'})[source]
AFQ.utils.bin.generate_config(toml_file, default_arg_dict, overwrite=False, logger=None)[source]
AFQ.utils.bin.generate_json(json_file, default_arg_dict, overwrite=False, logger=None)[source]