Installing pyAFQ

The pyAFQ software works on Python 3.6 and 3.7.

Installing the release version

The released version of the software is the one that is officially supported, and if you are getting started with pyAFQ, this is probably where you should get started

To install it, in a shell or command line, issue the following:

pip install pyAFQ

Installing the development version

The development version is probably less stable, but might include new features and fixes. There are two ways to install this version. The first uses pip:

pip install git+https://github.com/yeatmanlab/pyAFQ.git

The other requires that you clone the source code to your machine:

git clone https://github.com/yeatmanlab/pyAFQ.git

Then, change your working directory into the top-level directory of this repo and issue:

pip install -e .[dev,fury]

which will install pyAFQ locally in editible mode and include extensions.

Note

The project follows the standard github fork and pull request workflow. So if you plan on contributing to pyAFQ it is recommended that you fork the repository and issue pull requests.

See Contributing to pyAFQ

Note

It is also recommended that you utilize python virtual environment and package mangagement tools and begin with a clean environment.