The pyAFQ Mapping API

pyAFQ has a system for users to specify how to register an image from each subject to a given template, called the mapping. The mapping API is similar to our Mask API.

In AFQ/definitions/, there are four mapping classes one can use to specify the mapping. As a user, one should initialize mapping classes and pass them to the AFQ object, or write out the initialization as a string inside of one’s configuration file for use with the CLI.