How to examples

These examples provide details of various advanced and more complex usage of pyAFQ. These are intended to provide a reference and answer questions about the variety of pyAFQ functionality that is available.

How to add new bundles into pyAFQ (SLF 1/2/3 Example)

How to add new bundles into pyAFQ (SLF 1/2/3 Example)

BabyAFQ : tractometry for infant dMRI data

BabyAFQ : tractometry for infant dMRI data

Delineating cerebellar peduncles

Delineating cerebellar peduncles

Using cloudknot to run pyAFQ on AWS batch:

Using cloudknot to run pyAFQ on AWS batch:

AFQ with HCP data

AFQ with HCP data

How to add new bundles into pyAFQ (Acoustic Radiations Example)

How to add new bundles into pyAFQ (Acoustic Radiations Example)

Callosal bundles using AFQ API

Callosal bundles using AFQ API

How to use Free water DTI

How to use Free water DTI

How to add new bundles into pyAFQ(Optic Radiations Example)

How to add new bundles into pyAFQ(Optic Radiations Example)

Using RecoBundles for bundle recognition

Using RecoBundles for bundle recognition

Making videos the different stages of tractometry

Making videos the different stages of tractometry

Using Subject Space ROIs from Freesurfer

Using Subject Space ROIs from Freesurfer

How to segment out only some bundles

How to segment out only some bundles